Difference between revisions of "Enzymes"

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<p>The Enzymes wiki is being developed, but some great sites to go to until it is complete are:</p>
 
<p>The Enzymes wiki is being developed, but some great sites to go to until it is complete are:</p>
*<p>[https://www.enzyme-database.org/ ExploreEnz], which is a simple enzyme database based on the IUBMB enzyme list.</p>
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*<p>[https://www.enzyme-database.org/ ExploreEnz], a simple enzyme database based on the IUBMB enzyme list.</p>
*<p>[https://enzyme.expasy.org/ Expasy], which is another simple enzyme database also based on the IUBMB enzyme list.</p>
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*<p>[https://enzyme.expasy.org/ Expasy], another simple enzyme database also based on the IUBMB enzyme list.</p>
*<p>[https://www.ebi.ac.uk/intenz/index.jsp IntEnz], which is another simple enzyme database also based on the IUBMB enzyme list.</p>
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*<p>[https://www.ebi.ac.uk/intenz/index.jsp IntEnz], another simple enzyme database also based on the IUBMB enzyme list.</p>
*<p>[https://www.qmul.ac.uk/sbcs/iubmb/enzyme/ IUBMB], which is the IUBMB website.</p>
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*<p>[https://www.qmul.ac.uk/sbcs/iubmb/enzyme/ IUBMB], the IUBMB website.</p>
 
*<p>[https://www.genome.jp/kegg/annotation/enzyme.html KEGG enzyme], which is the enzyme part of the KEGG site, a very large and useful site.</p>
 
*<p>[https://www.genome.jp/kegg/annotation/enzyme.html KEGG enzyme], which is the enzyme part of the KEGG site, a very large and useful site.</p>
*<p>[https://www.brenda-enzymes.org/index.php Brenda], which is a very fancy database describing details of enzymes and their [https://www.brenda-enzymes.org/pathway_index.php pathways]. Will be a real shame when this one disappears.</p>
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*<p>[https://www.brenda-enzymes.org/index.php Brenda], a very fancy database describing details of enzymes and their [https://www.brenda-enzymes.org/pathway_index.php pathways]. Will be a real shame when this one disappears.</p>
*<p>[http://www.cazy.org/ CAZY], which is a smaller database focused on enzymes involving carbohydrates.</p>
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*<p>[http://www.cazy.org/ CAZY], a smaller database focused on enzymes involving carbohydrates.</p>
*<p>[http://www.enzyme.cbirc.iastate.edu/ ThYme], which is a smaller database focused on enzymes involving thioesters.</p>
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*<p>[http://www.enzyme.cbirc.iastate.edu/ ThYme], a smaller database focused on enzymes involving thioesters.</p>
*<p>[http://www.orphanenzymes.org/database/ Orphan], which is a smaller database focused on orphan enzymes.</p>
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*<p>[http://www.orphanenzymes.org/database/ Orphan], a smaller database focused on orphan enzymes.</p>
*<p>[https://hpcwebapps.cit.nih.gov/ESBL/Database/MetabolicEnzymes/MetabolicEnzymeDatabase.html MMEB], which is a smaller database focused on mammalian metabolic enzymes.</p>
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*<p>[https://hpcwebapps.cit.nih.gov/ESBL/Database/MetabolicEnzymes/MetabolicEnzymeDatabase.html MMEB], a smaller database focused on mammalian metabolic enzymes.</p>
*<p>[https://www.ebi.ac.uk/merops/ MEROPS], which is a smaller database focused on peptidases.</p>
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*<p>[https://www.ebi.ac.uk/merops/ MEROPS], a smaller database focused on peptidases.</p>
*<p>[https://www.rcsb.org/ PDB], which is a large database covering all proteins (173k structures!).</p>
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*<p>[https://www.rcsb.org/ PDB], a large database covering all proteins (173k structures!).</p>
*<p>[https://www.rhea-db.org/ Rhea reactions], which is a large database covering biochemical reactions and the enzymes and proteins associated with them.</p>
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*<p>[https://www.rhea-db.org/ Rhea reactions], a large database covering biochemical reactions and the enzymes and proteins associated with them.</p>
*<p>[http://worthington-biochem.com/index/manual.html Worthington Enzyme Manual], which is a company sponsored database of common enzymes and proteins.</p>
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*<p>[http://worthington-biochem.com/index/manual.html Worthington Enzyme Manual],a company sponsored database of common enzymes and proteins.</p>
 
<p>These links will probably not last long so get as much as you can from them before they disappear.</p>
 
<p>These links will probably not last long so get as much as you can from them before they disappear.</p>

Revision as of 07:21, 8 January 2021

The Enzymes wiki is being developed, but some great sites to go to until it is complete are:

  • ExploreEnz, a simple enzyme database based on the IUBMB enzyme list.

  • Expasy, another simple enzyme database also based on the IUBMB enzyme list.

  • IntEnz, another simple enzyme database also based on the IUBMB enzyme list.

  • IUBMB, the IUBMB website.

  • KEGG enzyme, which is the enzyme part of the KEGG site, a very large and useful site.

  • Brenda, a very fancy database describing details of enzymes and their pathways. Will be a real shame when this one disappears.

  • CAZY, a smaller database focused on enzymes involving carbohydrates.

  • ThYme, a smaller database focused on enzymes involving thioesters.

  • Orphan, a smaller database focused on orphan enzymes.

  • MMEB, a smaller database focused on mammalian metabolic enzymes.

  • MEROPS, a smaller database focused on peptidases.

  • PDB, a large database covering all proteins (173k structures!).

  • Rhea reactions, a large database covering biochemical reactions and the enzymes and proteins associated with them.

  • Worthington Enzyme Manual,a company sponsored database of common enzymes and proteins.

These links will probably not last long so get as much as you can from them before they disappear.